蛋白质互作数据库汇总

• 2019 年 12 月 13 日
• 筆記

1. MINT

Licata L, Briganti L, Peluso D, et al. MINT, the molecular interaction database: 2012 update[J]. Nucleic acids research, 2011, 40(D1): D857-D861.

网址：http://mint.bio.uniroma2.it/mint/

2. STRING

Szklarczyk D, Morris J H, Cook H, et al. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible[J]. Nucleic acids research, 2017, 45(D1): D362-D368.

网址：http://string-db.org/

3. HPRO

Prasad, T. S. K. et al. (2009) Human Protein Reference Database – 2009 Update. Nucleic Acids Research. 37, D767-72.

网址：http://www.hprd.org/

4. BioGRID

Chatr-aryamontri A, Oughtred R, Boucher L, et al. The BioGRID interaction database: 2017 update[J]. Nucleic acids research, 2017, 45(D1): D369-D379.

网址：http://thebiogrid.org/

5. DIPOS

Database of Interacting Proteins in Oryza Sativa

Sapkota A, Liu X, Zhao X M, et al. DIPOS: database of interacting proteins in Oryza sativa[J]. Molecular BioSystems, 2011, 7(9): 2615-2621.

网址：http://comp-sysbio.org/dipos/?id=5

6. DIP Database site

Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. (2004) The Database of Interacting Proteins: 2004 update. NAR 32:D449-51.

网址：http://dip.mbi.ucla.edu/dip/

7.PPIM

Zhu G, Wu A, Xu X J, et al. PPIM: A Protein-Protein Interaction Database for Maize[J]. Plant Physiology, 2016, 170(2):618.

网址：http://comp-sysbio.org/ppim

8.The Arabidopsis Interactions Viewer

The Arabidopsis Interactions ViewerThe Arabidopsis Interactions Viewer queries a database of 70944 predicted and 4300 confirmed Arabidopsis interacting proteins. The predicted interactions (interologs) were generated by Drs. Matt Geisler and Jane Geisler-Lee (Geisler-Lee et al., 2007) at the Southern Illinois University. Their current version is Interactome 2.0. The confirmed Arabidopsis interacting proteins come from BIND, the Biomolecular Interaction Network Database, high-density Arabidopsis protein microarrays (Popescu et al, 2007; Popescu et al., 2009) and other literature sources. The interactions in BIND were identified using several different methods, such as yeast two hybrid screens, but also via traditional biochemical methods. Use the links to BIND/PubMed records that are in the output of this viewer to view further information. All subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database. These localizations do not include predicted localizations.

网址：http://molbio.mgh.harvard.edu/sheenweb/protein_interactions.html

9.PIPs

McDowall, MD, Scott, MS and Barton, GJ PIPs: Human protein-protein interactions prediction database Nucleic Acids Research 37:D651-D656 2009.

网址：http://www.compbio.dundee.ac.uk/www-pips/

更多工具参见下面网址：

https://omictools.com/ppis-category